Stem-loop hsv2-mir-H9

Accession

MI0013559

Description

Herpes Simplex Virus 2 hsv2-mir-H9 precursor miRNA

Sequence

CUCGGAGGUGGAGUCGCGGUgaaggucgucgucagagaUUCCCACCUCGGUCUCCUCCUCcgag
((((((((.(((((((.((((..((((.((....))))))..)))).))).)))).))))))))

Structure

        U    -   C    aa    g  g 
CUCGGAGG GGAG UCG GGUg  gguc uc u
|||||||| |||| ||| ||||  |||| ||  
gagcCUCC CCUC GGC CCAC  UUag ag c
        U    U   U    CC    -  a 

Annotation confidence Not enough data

Genome context

Unknown

Disease association

hsv2-mir-H9 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsv2-miR-H9-5p

• Accession: MIMAT0015376
• Description: Herpes Simplex Virus 2 hsv2-miR-H9-5p mature miRNA
• Sequence: 1 - CUCGGAGGUGGAGUCGCGGU - 20
• Evidence: experimental ; Illumina [2]

Mature hsv2-miR-H9-3p

• Accession: MIMAT0014352
• Description: Herpes Simplex Virus 2 hsv2-miR-H9-3p mature miRNA
• Sequence: 39 - UUCCCACCUCGGUCUCCUCCUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672


2. PubMed ID: 19889786
   Identification of viral microRNAs expressed in human sacral ganglia latently infected with herpes simplex virus 2
   "Umbach JL, Wang K, Tang S, Krause PR, Mont EK, Cohen JI, Cullen BR"
   "J Virol (2010) 84:1189-1192