Stem-loop cqu-mir-317-1

Accession

MI0013583

Description

Culex quinquefasciatus cqu-mir-317-1 precursor miRNA

Literature search

1 open access papers mention cqu-mir-317-1
(5 sentences)

Sequence

gaggaauuucggcuacCGGGAUACACCCUGUGCUCGCUUUGCauucgaaacuagUGAACACAGCUGGUGGUAUCUcaguggcccugauccga
..(((.((..((((((.(((((((((((((((.(((((..............))))).)))))..))).))))))).))))))..)))))..

Structure

ga   a  uc      C       -   --     C     UUGCau 
  gga uu  ggcuac GGGAUAC ACC  CUGUG UCGCU      u
  ||| ||  |||||| ||||||| |||  ||||| |||||       
  ccu ag  ccggug cUCUAUG UGG  GACAC AGUga      c
ag   -  uc      a       G   UC     A     ucaaag 

Annotation confidence Low

Genome context

supercont3.36: 1133155-1133246 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-317-1

Mature cqu-miR-317-5p

• Accession: MIMAT0014384
• Description: Culex quinquefasciatus cqu-miR-317-5p mature miRNA
• Sequence: 17 - CGGGAUACACCCUGUGCUCGCUUUGC - 42
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-317-3p

• Accession: MIMAT0014385
• Description: Culex quinquefasciatus cqu-miR-317-3p mature miRNA
• Sequence: 55 - UGAACACAGCUGGUGGUAUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119