Stem-loop cqu-mir-12

Accession

MI0013591

Description

Culex quinquefasciatus cqu-mir-12 precursor miRNA

Literature search

1 open access papers mention cqu-mir-12
(2 sentences)

Sequence

aagauaaccugcuggugcucacgugucccgaaaagaagAAGAAUGAAAAUCCUGCCCUGUCGGAUUGAGUAUUACAUCAGGUACUGGUgucgauauuc
..((..(((....)))..))..............................................((((((((((((((...))))))).)))))))

Structure

aagauaaccugcuggugcucacgugucccgaaaagaagAAGAAUGAAAAUCCUGCCCUGUCGGAUU       -       G 
                                                                  GAGUAUU ACAUCAG  
                                                                  ||||||| ||||||| U
                                                                  cuuauag ugUGGUC  
------------------------------------------------------------------       c       A 

Annotation confidence Low

Genome context

supercont3.57: 562944-563041 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-mir-12

Mature cqu-miR-12-5p

• Accession: MIMAT0014394
• Description: Culex quinquefasciatus cqu-miR-12-5p mature miRNA
• Sequence: 39 - AAGAAUGAAAAUCCUGCCCUGUCGGAU - 65
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-12-3p

• Accession: MIMAT0014395
• Description: Culex quinquefasciatus cqu-miR-12-3p mature miRNA
• Sequence: 66 - UGAGUAUUACAUCAGGUACUGGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119