Stem-loop cqu-mir-71

Accession

MI0013596

Description

Culex quinquefasciatus cqu-mir-71 precursor miRNA

Sequence

cggcaAGAAAGACAUGGGUAGUGAGAUaguuuuacccugcauucgaaaaccgggaUCUCACUACCUUGUCUUUCAUGcugau
(((((.((((((((.((((((((((((.......(((..............))))))))))))))))))))))).)))))..

Structure

--     A        U            aguuuua   ugcauu 
  cggca GAAAGACA GGGUAGUGAGAU       ccc      c
  ||||| |||||||| ||||||||||||       |||       
  gucGU CUUUCUGU UCCAUCACUCUa       ggg      g
ua     A        -            -------   ccaaaa 

Annotation confidence Not enough data

Genome context

supercont3.366: 117497-117578 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-mir-71

Mature cqu-miR-71-5p

• Accession: MIMAT0014400
• Description: Culex quinquefasciatus cqu-miR-71-5p mature miRNA
• Sequence: 6 - AGAAAGACAUGGGUAGUGAGAU - 27
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-71-3p

• Accession: MIMAT0014401
• Description: Culex quinquefasciatus cqu-miR-71-3p mature miRNA
• Sequence: 56 - UCUCACUACCUUGUCUUUCAUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119