Stem-loop cqu-mir-11

Accession

MI0013601

Description

Culex quinquefasciatus cqu-mir-11 precursor miRNA

Literature search

2 open access papers mention cqu-mir-11
(4 sentences)

Sequence

gugccgcgCGAGAACUCCGGCUGUGACCugugugccccguguugaacuucaCAUCACAGUCUGAGUUCUUGCUugg
...(((.((((((((((.((((((((..((((.................)))))))))))).)))))))))).)))

Structure

gug   c          C        CC    ugccccg 
   ccg gCGAGAACUC GGCUGUGA  ugug       u
   ||| |||||||||| ||||||||  ||||       g
   ggu CGUUCUUGAG CUGACACU  ACac       u
---   U          U        --    uucaagu 

Annotation confidence Low

Genome context

supercont3.153: 639666-639741 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-11

Mature cqu-miR-11-5p

• Accession: MIMAT0014406
• Description: Culex quinquefasciatus cqu-miR-11-5p mature miRNA
• Sequence: 9 - CGAGAACUCCGGCUGUGACC - 28
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-11-3p

• Accession: MIMAT0014407
• Description: Culex quinquefasciatus cqu-miR-11-3p mature miRNA
• Sequence: 52 - CAUCACAGUCUGAGUUCUUGCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119