Stem-loop cqu-mir-996

Accession

MI0013609

Description

Culex quinquefasciatus cqu-mir-996 precursor miRNA

Sequence

aacucaauuuucgucggcgugcauguaucuggugcacgguuuucaguugcaauauagcuucgUGACUAGAUUACAUGCUCGUcuaugaaguug
....((((((.(((.((((.(((((((((((((.(((((.....(((((.....)))))))))))))))).))))))).)))).)))))))))

Structure

aacu      u   c    u       -      g     uuuuc     c 
    caauuu cgu ggcg gcaugua ucuggu cacgg     aguug a
    |||||| ||| |||| ||||||| |||||| |||||     ||||| a
    guugaa gua cUGC CGUACAU AGAUCA GUgcu     ucgau u
----      -   u    U       U      -     -----     a 

Annotation confidence Low

Genome context

supercont3.19: 1436999-1437091 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-996

Mature cqu-miR-996

• Accession: MIMAT0014419
• Description: Culex quinquefasciatus cqu-miR-996 mature miRNA
• Sequence: 63 - UGACUAGAUUACAUGCUCGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119