miRBase entry: cqu-mir-996

Stem-loop cqu-mir-996

Accession

MI0013609

Description

Culex quinquefasciatus cqu-mir-996 precursor miRNA

Sequence

aacucaauuuucgucggcgugcauguaucuggugcacgguuuucaguugcaauauagcuucgUGACUAGAUUACAUGCUCGUcuaugaaguug
....((((((.(((.((((.(((((((((((((.(((((.....(((((.....)))))))))))))))).))))))).)))).)))))))))

Structure

aacu      u   c    u       -      g     uuuuc     c 
    caauuu cgu ggcg gcaugua ucuggu cacgg     aguug a
    |||||| ||| |||| ||||||| |||||| |||||     ||||| a
    guugaa gua cUGC CGUACAU AGAUCA GUgcu     ucgau u
----      -   u    U       U      -     -----     a

Annotation confidence Not enough data

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Genome context

supercont3.19: 1436999-1437091 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-996

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cqu-miR-996

Accession	MIMAT0014419
Description	Culex quinquefasciatus cqu-miR-996 mature miRNA
Sequence	63 - UGACUAGAUUACAUGCUCGU - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 20167119
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
BMC Genomics (2010) 11:119