Stem-loop cqu-mir-1889

Accession

MI0013628

Description

Culex quinquefasciatus cqu-mir-1889 precursor miRNA

Literature search

2 open access papers mention cqu-mir-1889
(7 sentences)

Sequence

uugcaccgucccggagUAAUCUCAAAUUGUAACAGUGGguuuuuucaacggcaaagcacaaacuuugaaacgucccuccguucgagagaacauuugcuauaccCACGUUACAGAUUGGGGUUUCCccgggucgugccgu
..((((.(.(((((.(.((((((((.(((((((.((((((((((((((((((((((......)))))..........))))).))))))...........))))))))))))).)))))))).).))))).)))))...

Structure

-uu    c u     a U        A       A      -----------      -     ----------     ca 
   gcac g cccgg g AAUCUCAA UUGUAAC GUGGgu           uuuuuc aacgg          caaag  c
   |||| | ||||| | |||||||| ||||||| ||||||           |||||| |||||          |||||   
   cgug c gggcc C UUGGGGUU GACAUUG CACcca           agagag uugcc          guuuc  a
ugc    - u     C U        A       -      uaucguuuaca      c     ucccugcaaa     aa 

Annotation confidence Not enough data

Genome context

supercont3.57: 562539-562677 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-mir-1889

Mature cqu-miR-1889-5p

• Accession: MIMAT0014440
• Description: Culex quinquefasciatus cqu-miR-1889-5p mature miRNA
• Sequence: 17 - UAAUCUCAAAUUGUAACAGUGG - 38
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-1889-3p

• Accession: MIMAT0014441
• Description: Culex quinquefasciatus cqu-miR-1889-3p mature miRNA
• Sequence: 104 - CACGUUACAGAUUGGGGUUUCC - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119