Stem-loop hsa-mir-548t

Accession

MI0014164

Symbol

HGNC: MIR548T

Description

Homo sapiens hsa-mir-548t precursor miRNA

Literature search

41 open access papers mention hsa-mir-548t
(142 sentences)

Sequence

4180 reads, 104 reads per million, 110 experiments

aggguggugCAAAAGUGAUCGUGGUUUUUGcaauuuuuuaaugacAAAAACCACAAUUACUUUUGCACCAaccu
(((.(((((((((((((((.((((((((((..(((....)))..)))))))))).))))))))))))))).)))

Structure

   g               C          ca   u 
agg uggugCAAAAGUGAU GUGGUUUUUG  auu u
||| ||||||||||||||| ||||||||||  |||  
ucc ACCACGUUUUCAUUA CACCAAAAAc  uaa u
   a               A          ag   u 

Annotation confidence Not enough data

Genome context

chr4: 173268160-173268233 [+]

Disease association

hsa-mir-548t is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-548t-5p

• Accession: MIMAT0015009
• Description: Homo sapiens hsa-miR-548t-5p mature miRNA
• Sequence: 10 - CAAAAGUGAUCGUGGUUUUUG - 30
• Evidence: experimental ; Illumina [1], Northern [2]

Mature hsa-miR-548t-3p

• Accession: MIMAT0022730
• Description: Homo sapiens hsa-miR-548t-3p mature miRNA
• Sequence: 46 - AAAAACCACAAUUACUUUUGCACCA - 70
• Evidence: not_experimental

References

1. PubMed ID: 20300190
   Characterization of the Melanoma miRNAome by Deep Sequencing
   "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
   "PLoS One (2010) 5:e9685


2. PubMed ID: 20532037
   Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes
   Hansen TB, Bramsen JB, Kjems J
   PLoS One (2010) 5:e10961