miRBase entry: aly-MIR164b

Stem-loop aly-MIR164b


Accession
MI0014528
Description
Arabidopsis lyrata aly-MIR164b precursor miRNA


Sequence

96 reads, 3347 reads per million, 1 experiments
gaUGGAGAAGCAGGGCACGUGCAuuacuagcucaucucguaugcauauauauauacauccucaccacaaaugcguguauaugugcggagauauagauauauauguguguggagugugaugauauaaaugaguuaguucuuCAUGUGCCCAUCUUCACCAUC
(((((.((((..(((((((((....(((((((((((((.(((((((((((((((.....(((..((((.(((....))).))))..)))......)))))))))))))))))).............))))))))))....)))))))))..)))).)))))

Structure
     A    CA         CAuu          -------------   g               -acauc   ac    a   c 
gaUGG GAAG  GGGCACGUG    acuagcucau             cuc uaugcauauauauau      cuc  caca aug g
||||| ||||  |||||||||    ||||||||||             ||| |||||||||||||||      |||  |||| |||  
CUACC CUUC  CCCGUGUAC    ugauugagua             gag guguguguauauaua      gag  gugu uau u
     A    UA         uucu          aauauaguagugu   -               gauaua   gc    a   g 


Annotation confidence Not enough data
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Genome context
GL348718.1: 111783-111943 [-]

Database links

Mature aly-miR164b-5p

Accession MIMAT0017451
Description Arabidopsis lyrata aly-miR164b-5p mature miRNA
Sequence 3 - UGGAGAAGCAGGGCACGUGCA - 23
Evidence experimental
Illumina [1]
Database links

Mature aly-miR164b-3p

Accession MIMAT0017452
Description Arabidopsis lyrata aly-miR164b-3p mature miRNA
Sequence 141 - CAUGUGCCCAUCUUCACCAUC - 161
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089