Accession
MI0014577
Description
Arabidopsis lyrata
aly-MIR395c precursor miRNA
Sequence
22289
reads,
519.0
reads per million, 11 experiments
augacagagcuacaagaagaaagucaaaugucuucaugaGUUCCCUUUAACGCUUCAUUguuaauauucaaacuacauuuauuuccauaaauguuugaucgauuuguauauaacaCUGAAGUGUUUGGGGGGACUuuuggugucauucuggcguaguuacgauuau
((((..(((((((.........((((((((.(.(((.((((((((((.(((((((((.(((((((((((((...((((((((....)))))))))))).......)))).))))).))))))))).)))))))))).))).).)))).)))))))))).)..))))
((((..(((((((.........((((((((.(.(((.((((((((((.(((((((((.(((((((((((((...((((((((....)))))))))))).......)))).))))).))))))))).)))))))))).))).).)))).)))))))))).)..))))
Structure
ca - aagaagaaa - u u u U U - ------- acu u
auga g agcuac guca aaug c uca gaGUUCCCUU AACGCUUCA Uguua auau ucaa acauuuau u
|||| | |||||| |||| |||| | ||| |||||||||| ||||||||| ||||| |||| |||| ||||||||
uauu c uugaug cggu uuac g ggu uUCAGGGGGG UUGUGAAGU acaau uaug aguu uguaaaua c
ag a --------- c u u u U C a uuuagcu --- c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
GL348713.1: 10968022-10968187 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR395c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR395c-5p
| Accession | MIMAT0017549 |
| Description | Arabidopsis lyrata aly-miR395c-5p mature miRNA |
| Sequence | 40 - GUUCCCUUUAACGCUUCAUU - 59 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR395c-3p
| Accession | MIMAT0017550 |
| Description | Arabidopsis lyrata aly-miR395c-3p mature miRNA |
| Sequence | 116 - CUGAAGUGUUUGGGGGGACU - 135 |
| Evidence |
experimental
Illumina [1] |
References
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