Stem-loop aly-MIR395c

Accession

MI0014577

Description

Arabidopsis lyrata aly-MIR395c precursor miRNA

Sequence

augacagagcuacaagaagaaagucaaaugucuucaugaGUUCCCUUUAACGCUUCAUUGuuaauauucaaacuacauuuauuuccauaaauguuugaucgauuuguauauaacaCUGAAGUGUUUGGGGGGACUUuuggugucauucuggcguaguuacgauuau
((((..(((((((.........((((((((.(.(((.((((((((((.(((((((((.(((((((((((((...((((((((....)))))))))))).......)))).))))).))))))))).)))))))))).))).).)))).)))))))))).)..))))

Structure

    ca -      aagaagaaa    -    u u   u          U         U     -    -------    acu        u 
auga  g agcuac         guca aaug c uca gaGUUCCCUU AACGCUUCA UGuua auau       ucaa   acauuuau u
||||  | ||||||         |||| |||| | ||| |||||||||| ||||||||| ||||| ||||       ||||   ||||||||  
uauu  c uugaug         cggu uuac g ggu UUCAGGGGGG UUGUGAAGU acaau uaug       aguu   uguaaaua c
    ag a      ---------    c    u u   u          U         C     a    uuuagcu    ---        c 

Annotation confidence Not enough data

Genome context

GL348713.1: 10968022-10968187 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR395c

Mature aly-miR395c-5p

• Accession: MIMAT0017549
• Description: Arabidopsis lyrata aly-miR395c-5p mature miRNA
• Sequence: 40 - GUUCCCUUUAACGCUUCAUUG - 60
• Evidence: experimental ; Illumina [1]

Mature aly-miR395c-3p

• Accession: MIMAT0017550
• Description: Arabidopsis lyrata aly-miR395c-3p mature miRNA
• Sequence: 116 - CUGAAGUGUUUGGGGGGACUU - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089