Accession
MI0014587
Description
Arabidopsis lyrata
aly-MIR398c precursor miRNA
Sequence
gguaguggaucucgacaGGGUCGACAUGAGAACAUAUGagcaaucaacggcuguaaaugacgcuacgucauuauuacaucucucgguuucaUGUGUUAACUCAGGUCACCCCUGcugagcucuuucucuacc
(((((.(((.((((.(((((..(((.(((((((((((((..((((...((.(((((((((((...))))))..))))).))...)))))))))))))..)))).)))..))))).)))).)))....)))))
(((((.(((.((((.(((((..(((.(((((((((((((..((((...((.(((((((((((...))))))..))))).))...)))))))))))))..)))).)))..))))).)))).)))....)))))
Structure
---u u a UC A -- gc aac c -- c
gguag gga cucg caGGG GAC UGAG AACAUAUGa aauc gg uguaa augacg
||||| ||| |||| ||||| ||| |||| ||||||||| |||| || ||||| |||||| u
ccauc ucu gagu GUCCC CUG ACUC UUGUGUacu uugg uc acauu uacugc
ucuu c c CA G AA -- cuc u au a
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348718.1: 5880311-5880442 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR398c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR398c-5p
| Accession | MIMAT0017569 |
| Description | Arabidopsis lyrata aly-miR398c-5p mature miRNA |
| Sequence | 18 - GGGUCGACAUGAGAACAUAUG - 38 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR398c-3p
| Accession | MIMAT0017570 |
| Description | Arabidopsis lyrata aly-miR398c-3p mature miRNA |
| Sequence | 92 - UGUGUUAACUCAGGUCACCCCUG - 114 |
| Evidence |
experimental
Illumina [1] |
References
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