Stem-loop aly-MIR398c

Accession

MI0014587

Description

Arabidopsis lyrata aly-MIR398c precursor miRNA

Sequence

gguaguggaucucgacaGGGUCGACAUGAGAACAUAUGagcaaucaacggcuguaaaugacgcuacgucauuauuacaucucucgguuucaUGUGUUAACUCAGGUCACCCCUGcugagcucuuucucuacc
(((((.(((.((((.(((((..(((.(((((((((((((..((((...((.(((((((((((...))))))..))))).))...)))))))))))))..)))).)))..))))).)))).)))....)))))

Structure

     ---u   u    a     UC   A    --         gc    aac  c     --      c 
gguag    gga cucg caGGG  GAC UGAG  AACAUAUGa  aauc   gg uguaa  augacg  
|||||    ||| |||| |||||  ||| ||||  |||||||||  ||||   || |||||  |||||| u
ccauc    ucu gagu GUCCC  CUG ACUC  UUGUGUacu  uugg   uc acauu  uacugc  
     ucuu   c    c     CA   G    AA         --    cuc  u     au      a 

Annotation confidence Not enough data

Genome context

GL348718.1: 5880311-5880442 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR398c

Mature aly-miR398c-5p

• Accession: MIMAT0017569
• Description: Arabidopsis lyrata aly-miR398c-5p mature miRNA
• Sequence: 18 - GGGUCGACAUGAGAACAUAUG - 38
• Evidence: experimental ; Illumina [1]

Mature aly-miR398c-3p

• Accession: MIMAT0017570
• Description: Arabidopsis lyrata aly-miR398c-3p mature miRNA
• Sequence: 92 - UGUGUUAACUCAGGUCACCCCUG - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089