Stem-loop aly-MIR781

Accession

MI0014600

Description

Arabidopsis lyrata aly-MIR781 precursor miRNA

Sequence

812 reads, 104.0 reads per million, 8 experiments

guuucaauuUAGAGUUUUCUGGAUACUUAAuaguuacuaacaaagaaaggguuucuucuauauuaacuucuAAGUAUCCAGAAAACUCUAAUUUgaaac
(((((((.(((((((((((((((((((((..(((((.((...((((((...))))))...)).)))))..))))))))))))))))))))).)))))))

Structure

       u                     Au     c  aca      g 
guuucaa uUAGAGUUUUCUGGAUACUUA  aguua ua   aagaaa  
||||||| |||||||||||||||||||||  ||||| ||   |||||| g
caaagUU AAUCUCAAAAGACCUAUGAAu  ucaau au   uucuuu  
       U                     cu     u  auc      g 

Annotation confidence Medium

Genome context

GL348713.1: 9134491-9134589 [+]

Mature aly-miR781-5p

• Accession: MIMAT0017597
• Description: Arabidopsis lyrata aly-miR781-5p mature miRNA
• Sequence: 10 - UAGAGUUUUCUGGAUACUUAA - 30
• Evidence: experimental ; Illumina [1]

Mature aly-miR781-3p

• Accession: MIMAT0017598
• Description: Arabidopsis lyrata aly-miR781-3p mature miRNA
• Sequence: 72 - AAGUAUCCAGAAAACUCUAAUUU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089