Stem-loop aly-MIR844

Accession

MI0014616

Description

Arabidopsis lyrata aly-MIR844 precursor miRNA MIR844

Gene
family

RF04148; MIR844

Sequence

15121 reads, 1371.0 reads per million, 12 experiments

gaguauaaaguuguaaguugguuugaugaaucuuuuagauugaAGAAAAGAAGGACUAGUAAGAuggcuuauaagcuggauuuugagagugagugagcucuucuacgcauuggcuuauaagccaucUUACUAGUCUUUCUUUUCUUCAauguggggaucauaacaguuuuaaggaaugucuc
(((.(((...((..((((((.....((((.(((((.(.(((((((((((((((((((((((((((((((((((((((((.....((((((......)))))).......))))))))))))))))))))))))))))))))))))))))).))))))))))..))))))..))...))))))

Structure

   u   aag  gu      guuug    a     u g                                         --auuuu      ga 
gag aua   uu  aaguug     auga ucuuu a auugaAGAAAAGAAGGACUAGUAAGAuggcuuauaagcugg       gagagu  g
||| |||   ||  ||||||     |||| ||||| | |||||||||||||||||||||||||||||||||||||||||       ||||||   
cuc ugu   ga  uuugac     uacu agggg u uaACUUCUUUUCUUUCUGAUCAUUcuaccgaauauucgguu       uucucg  u
   -   aag  au      ---aa    -     - g                                         acgcauc      ag 

Annotation confidence High

Genome context

GL348716.1: 1803605-1803786 [-]

Mature aly-miR844-5p

• Accession: MIMAT0017629
• Description: Arabidopsis lyrata aly-miR844-5p mature miRNA
• Sequence: 44 - AGAAAAGAAGGACUAGUAAGA - 64
• Evidence: experimental ; Illumina [1]

Mature aly-miR844-3p

• Accession: MIMAT0017630
• Description: Arabidopsis lyrata aly-miR844-3p mature miRNA
• Sequence: 127 - UUACUAGUCUUUCUUUUCUUCA - 148
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089