Accession
MI0014623
Description
Arabidopsis lyrata
aly-MIR857 precursor miRNA
Sequence
cucaaaauuucuaauauuuucgacugcuacaacAAACUUUCACCAUACAAAAUAaucaagaaaaacacucaaaaagauugaaugugugagguuagucucauuaacggaauugugaacaauuuuguuaaaaaauagugacuugguuuucaaauguauuuuuuuaaagaauaauguuuuuuagcuuuuuauuauauaucaacaugagaccucagguaacaagguaaaagagacagaaaaauaaaaaaauuuaauuuuuucaaguuuauaguuuauaguaaagaaguuuuuuuuuuuuuugaaaaauauauuuuaaaacagugucacuauuuuaaacggcaaauggacauuucuauuaaugagauuaaugucgagcauuuggauuucuauuugaguacuuuuuguuucuaaguuaUUUUGUAUGUUGAAGGUGUAUuguaggaaucggaaacaucaacucucaagauuuuuaugag
(((((((..(((....(((((((.(.((((((...(((((((.(((((((((((((..(((((...(((((((.(((((((((((.(((.((((((((((((((.((((..(((..((..((((((..(((((((((((...(((((.(((((((((((((.((((((...........(((((((((((((((((.(((.(((.((((..(....).))))..........(((((.((((....)))).)))))))).))).)))...)))))).)))))))).....)))))).))))))))))))).)))))...)))))))))))....))))))))..))))))).)))))))))))))).))).))))))))...))).)))))))........)))))..))))))))))))).)))))))...)))))).).)))))))............)))..))).))))
(((((((..(((....(((((((.(.((((((...(((((((.(((((((((((((..(((((...(((((((.(((((((((((.(((.((((((((((((((.((((..(((..((..((((((..(((((((((((...(((((.(((((((((((((.((((((...........(((((((((((((((((.(((.(((.((((..(....).))))..........(((((.((((....)))).)))))))).))).)))...)))))).)))))))).....)))))).))))))))))))).)))))...)))))))))))....))))))))..))))))).)))))))))))))).))).))))))))...))).)))))))........)))))..))))))))))))).)))))))...)))))).).)))))))............)))..))).))))
Structure
- uu --------aaua c g cAA C ca -----aac a --- g g c uu aa au --aa uug c u uaauguuuuuu - --- c a gaccucagguaacaagguaaaagagaca a a
cuca aaa ucu uuuucga u cuacaa ACUUUCA CAUACAAAAUAau agaaa acucaaa aga uugaaugu uga guuagucucauuaa ggaa gug ca uuuguu aaaauagugac guuuu aaauguauuuuuu aaagaa agcuuuuu auuaua uau aac uga gaaaa uaaa a
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gagu uuu aga aaaggcu a gauguU UGGAAGU GUAUGUUUUauug ucuuu ugaguuu ucu gguuuacg gcu uaauuagaguaauu ucuu uac gu aaacgg uuuuaucacug caaaa uuuauauaaaaag uuuuuu uugaagaa ugauau aua uug acu uuuuu auuu a
a uu acucucaacuac a g AUG U aa guuuuuca a uua a g a -- ag -- caaa uga u u ------uuuuu a uug u a ---------------------------- a a
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348719.1: 14977807-14978279 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR857
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR857-5p
| Accession | MIMAT0017643 |
| Description | Arabidopsis lyrata aly-miR857-5p mature miRNA |
| Sequence | 34 - AAACUUUCACCAUACAAAAUA - 54 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR857-3p
| Accession | MIMAT0017644 |
| Description | Arabidopsis lyrata aly-miR857-3p mature miRNA |
| Sequence | 413 - UUUUGUAUGUUGAAGGUGUAU - 433 |
| Evidence |
experimental
Illumina [1] |
References
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