Stem-loop aly-MIR858

Accession

MI0014624

Description

Arabidopsis lyrata aly-MIR858 precursor miRNA

Sequence

agagugauuggauucgaugcuaggcuugacaaagugagcaaucuuauguguucucaucuuugUUUCGUUGUCUGUUCGACCUUggucucgaucucuccuuaaaacccuaauacguuaucguuuauuucauucaucuauccuucuuaugaucaucauacaugguaucgguuuaugauugaugggguagauagaugaucgaaacuuuugauuucugaggcuuuuuuuuuuuuuuuaaacauuuaguauaccagauauuacuaguacacacauacauacugacacgauagucuauuugaugauuaagucuuuacguucguauacauacggauuucccuuucuuuugcauaaaaucuuagauuaucguaggcaugcggauuuacaauaagaaagaugauugucuauggaauuuaaugacauaaaaggaccuaaaauauggaaaccuucuucuguaaaucauuugaaugauucgguuggaggaaaauauauauuccaccgaauaggauaguuucauguagagacuacauuauuacauauugacgugagagaguuccauguaacuaagcaugcgcuugaugaauaaacacauaagcaaaaccaugagcauaaacauauacguauacaugauuaacugugcugguauuguauauggauaucaugagauugaaaaaguagcaauaacaaaguauacaguuuauuagagucguuaauuccuaaggucauuugaucuccauuuuccccguaucgauauguuuuuuuuuuacuuuuuuuuuuuuuaauuuuaauucuguggagggaaguuacaucugauguauuaacaaaaaaagaaaguuaaaugugauguuaaagucaaagccaaGGUCGAGCAGACAACGAAGAUaagauggaaccagaucgggacuacuccuuugacaaguguuugcacugaauucaaaaacuuu
.((((..(((((((((.(((.(.(((((.(((((.(((...((((((.(((((.((((((..((((((((((((((((((((((((...........................(..((((....((((..(((((((((..((((((.(..((((((.((.(...).)).))))))).))))))..)))))))))..))))....))))..)...((((((((((((((..........((((((((.(((((...(((.(((......)))........((((((((((((((.(((...(((.......(((((((....)))))))........)))...))).)))...)))))))))))..((((((..(.((((........((((....))))(((((((((..(.((....((((.((........))...))))........((((((....))))))((((.((((...........))))))))(((((..(((((((.....)))))))..)))))..........)).)..))))))))))))).)..))))))(((((.((........)))))))..............((((((((.((.((((..(((((((....((((((((((((((........((..(((.....)))..))........)))))))))..)))))....)))))))....(((((....)))))...........))))))))))))))(((((((((.........................))))))))))))...))))).)))))))).)))))))))))))).....((((......))))..))))))))))))))))))))))))..))))))))).)).)).))))...)))))))).))))).)..))).)))))))))..)))).

Structure

a    ga         a   -u g     a     u   caa    -  g  -   u      ug                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cucgaucucuccuuaaaacccuaauac uu    uuua    au         cu      g uc      c  g u 
 gagu  uuggauucg ugc  a gcuug caaag gag   ucuu au ug uuc caucuu  UUUCGUUGUCUGUUCGACCUUggu                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               g  aucg    uuuc  ucaucuauc  ucuuau a  aucaua au g  
 ||||  ||||||||| |||  | ||||| ||||| |||   |||| || || ||| ||||||  ||||||||||||||||||||||||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               |  ||||    ||||  |||||||||  |||||| |  |||||| || | a
 uuca  aacuuaagu acg  u ugaac guuuc cuc   aggg ua ac aag guagaa  GAAGCAACAGACGAGCUGGaaccg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               c  uagu    aaag  aguagauag  ggggua u  uaguau ug c  
u    aa         c   uu g     a     -   auc    c  g  c   -      UA                        aaacugaaauuguaguguaaauugaaagaaaaaaacaauuauguagucuacauugaagggaggugucuuaauuuuaauuuuuuuuuuuuucauuuuuuuuuuguauagcuaugccccuuuuaccucuaguuuacuggaauccuuaauugcugagauuauuugacauaugaaacaauaacgaugaaaaaguuagaguacuauagguauauguuauggucgugucaauuaguacauaugcauauacaaauacgaguaccaaaacgaauacacaaauaaguaguucgcguacgaaucaauguaccuugagagagugcaguuauacauuauuacaucagagauguacuuugauaggauaagccaccuuauauauaaaaggagguuggcuuaguaaguuuacuaaaugucuucuuccaaagguauaaaauccaggaaaauacaguaauuuaagguaucuguuaguagaaagaauaacauuuaggcguacggaugcuauuagauucuaaaauacguuuucuuucccuuuaggcauacauaugcuugcauuucugaauuaguaguuuaucugauagcacagucauacauacacacaugaucauuauagaccauaugauuuacaaauuuuuuuuuuuuuuucggagu uu    uuuc    cu         au      g --      u  g u 

Annotation confidence Not enough data

Genome context

GL348714.1: 14734032-14734969 [-]

Mature aly-miR858-5p

• Accession: MIMAT0017645
• Description: Arabidopsis lyrata aly-miR858-5p mature miRNA
• Sequence: 63 - UUUCGUUGUCUGUUCGACCUU - 83
• Evidence: experimental ; Illumina [1]

Mature aly-miR858-3p

• Accession: MIMAT0017646
• Description: Arabidopsis lyrata aly-miR858-3p mature miRNA
• Sequence: 857 - GGUCGAGCAGACAACGAAGAU - 877
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089