Stem-loop aly-MIR319d

Accession

MI0014633

Description

Arabidopsis lyrata aly-MIR319d precursor miRNA

Literature search

1 open access papers mention aly-MIR319d
(1 sentences)

Sequence

684471 reads, 9791.0 reads per million, 12 experiments

auagauagauauaugaaucgagauuaaaauagauagauauagaaggagauucuuucaguccagucauggauagaaaaagaagaggguagaaauAUCUGCCGACUCAUCCAUCCAaacacucgugguagagaaacgaucaauuuuaaaccgcagugacuguaugaaugaugcgggagauauuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCuucuuuuucuacaauuuuuucauuuuuuucucaucaucuguuuau
(((((((((....(((...((((..(((((.((((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))........)))))))..)))).))))))))))))

Structure

         uaua   auc    uu     a  --------    uau        a              u        gaaa      a  g           G   AC    C   C  aa    c     ag    acg 
auagauaga    uga   gaga  aaaau ga        uaga   agaaggag uucuuucaguccag cauggaua    aagaag gg uagaaauAUCU CCG  UCAU CAU CA  cacu guggu  agaa   a
|||||||||    |||   ||||  ||||| ||        ||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||    
uauuugucu    acu   cucu  uuuua cu        aucu   ucuuCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuuauaga ggc  agua gua gu  guga cgcca  uuuu   u
         ----   --a    uu     -  uuuuuaac    uuu        G              u        ----      -  a           g   gu    a   u  ca    -     aa    aac 

Annotation confidence Low

Genome context

GL348716.1: 18166558-18166824 [+]

Mature aly-miR319d-5p

• Accession: MIMAT0017663
• Description: Arabidopsis lyrata aly-miR319d-5p mature miRNA
• Sequence: 94 - AUCUGCCGACUCAUCCAUCCA - 114
• Evidence: experimental ; Illumina [1]

Mature aly-miR319d-3p

• Accession: MIMAT0017664
• Description: Arabidopsis lyrata aly-miR319d-3p mature miRNA
• Sequence: 204 - UUGGACUGAAGGGAGCUCC - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089