Stem-loop aly-MIR158b

Accession

MI0014639

Description

Arabidopsis lyrata aly-MIR158b precursor miRNA MIR158

Gene
family

RF00845; MIR158

Sequence

1572855 reads, 63907.0 reads per million, 12 experiments

ucagaagaauaguaacucgucaucucugugccuCUUUGUCUACAAUUUUGGAAAaaguagugucgccauuguuuuuuUCCCAAAUGUAGACAAAGCGauaccgugaugacguuauagagauuuuguuuga
((((((((((.......(((((((.(.(((.(.(((((((((((.(((.((((((((.((((....))))..)))))))).)))))))))))))).).))).).)))))))........))))).)))))

Structure

     -     -aguaacu       u u   c u           A   U        -u    u 
ucaga agaau        cgucauc c gug c CUUUGUCUACA UUU GGAAAaag  agug c
||||| |||||        ||||||| | ||| | ||||||||||| ||| ||||||||  ||||  
aguuu uuuua        gcaguag g cau G GAAACAGAUGU AAA CCUuuuuu  uuac g
     g     gagauauu       u c   a C           -   C        ug    c 

Annotation confidence High

Genome context

GL348713.1: 29396569-29396698 [+]

Mature aly-miR158b-5p

• Accession: MIMAT0017675
• Description: Arabidopsis lyrata aly-miR158b-5p mature miRNA
• Sequence: 34 - CUUUGUCUACAAUUUUGGAAA - 54
• Evidence: experimental ; Illumina [1]

Mature aly-miR158b-3p

• Accession: MIMAT0017676
• Description: Arabidopsis lyrata aly-miR158b-3p mature miRNA
• Sequence: 78 - UCCCAAAUGUAGACAAAGCG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089