Accession
MI0014640
Description
Arabidopsis lyrata
aly-MIR163 precursor miRNA
Literature search
2 open access papers mention aly-MIR163
(5 sentences)
(5 sentences)
Sequence
54669
reads,
2426.0
reads per million, 12 experiments
gugggagacaaguaccuucgagaaaccggccaaaacccgguggauaaaaUCGAGUUCCAGCCUCCUCAGAgacuuuagcaacaacgauuucaacacucucuuacaggaacuuccuccaggcagaagauacugucuugcgaaguuccggguuccuucuucguccgugagucaugaucaagauacgcuuucuugaccacaugguugaaccagugcaaugcauguugcuguuccacaugggagagucgcgguuuuugaucccuuuggggauuuuggaggugaaauggaacgcguaauugaugacuccuauguggaaacucuuaugucgaagaaggaaccgcgauuuugcuaauccaagugcuuaaaucguugaggcugaagucguUGAAGAGGACUUGGAACUCGAUCUuauccaccgcguuuuauccgguuucucuguggguugugaaauauuuuau
.......(((...((((.(((((((((((..(((((.((((((((((.((((((((((((((((.((((.(((((((((..(((((((((...((((........((((((((....((((((......))))))...)))))))).(((((((((((((..((((((...((.((((((.......)))))).))..((((...))))..(((((....)))))..(((((((((((((.(((((((((((...(((((((((.....))))))).))...))))).)))....)))..)))))))))))))...)))))).)))))))))))))(((....))).......))))...)))))))))..))))))))).)))).)))).).))))))))))).)))))))))).)))))..)))))))))).).)))))))............
.......(((...((((.(((((((((((..(((((.((((((((((.((((((((((((((((.((((.(((((((((..(((((((((...((((........((((((((....((((((......))))))...)))))))).(((((((((((((..((((((...((.((((((.......)))))).))..((((...))))..(((((....)))))..(((((((((((((.(((((((((((...(((((((((.....))))))).))...))))).)))....)))..)))))))))))))...)))))).)))))))))))))(((....))).......))))...)))))))))..))))))))).)))).)))).).))))))))))).)))))))))).)))))..)))))))))).).)))))))............
Structure
-----gugggag agu u - cc c a - - C A aa caa cucuuacaggaacuuccuccaggcagaagauacugucuugcgaaguuccg uc ucaugaucaagauacgcuuucuugaccacaugguugaaccagugcaaugcauguugcug -a ---- - uga - g
aca accu c gagaaaccgg aaaac cgguggauaa aUCGAGUUCCA G CCUC UCAG gacuuuagc caacgauuu cacu gguuccuucuucg cgugag uuccacaugggag guc gcg guuuu uc ccuuugg g
||| |||| | |||||||||| ||||| |||||||||| ||||||||||| | |||| |||| ||||||||| ||||||||| |||| ||||||||||||| |||||| ||||||||||||| ||| ||| ||||| || ||||||| a
ugu uggg g cucuuuggcc uuuug gccaccuauU UAGCUCAAGGU C GGAG AGUu cugaagucg guugcuaaa guga ccaaggaagaagc guauuc aagguguauccuc uag ugc caagg ag ggagguu u
uauuuuauaaag --- u u ua c C U A A g ga uuc ---------------------------------accuaaucguuuuagcg -u --------------------------------------------------------uca ag uuaa g uaa u u
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
GL348714.1: 11750816-11751270 [+]
Database links
Mature aly-miR163-5p
| Accession | MIMAT0017677 |
| Description | Arabidopsis lyrata aly-miR163-5p mature miRNA |
| Sequence | 50 - UCGAGUUCCAGCCUCCUCAGA - 70 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR163-3p
| Accession | MIMAT0017680 |
| Description | Arabidopsis lyrata aly-miR163-3p mature miRNA |
| Sequence | 383 - UGAAGAGGACUUGGAACUCGAUCU - 406 |
| Evidence |
experimental
Illumina [1] |
References
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