Stem-loop aly-MIR773b

Accession

MI0014642

Description

Arabidopsis lyrata aly-MIR773b precursor miRNA

Sequence

700 reads, 88.0 reads per million, 8 experiments

gcaucaacauccucgaacgaacgagggaguguagaugcuuaacgggugaaggAGGCAAUAUCUUUGAACAAACAGUugauuuuagaauuccaacaacuaaagguguggagaacauacaguaccuuuagucgauguacuucugcaaucaauuguUCAUUCAAGGAUAUUGUAUCcuucaacuuuugagcgucaaaacccucucauucaguucgagaauuauugucgc
((..(((....((((((((((.(((((.((...(((((((((.((.(((((((.((((((((((((((..(((((((((((.(((((...((.(.((((((((((((.........)).)))))))))).).))...))))).)))))))))))..)))))))))))))).))))))).)).)))))))))...)).))))).))).))))))).....)))..))

Structure

  au   -cauc       -   c     a  gua         c  g       G              CA           u     uuc  a a          -  gag 
gc  caa     cucgaac gaa gaggg gu   gaugcuuaa gg ugaaggA GCAAUAUCUUUGAA  AACAGUugauu uagaa   ca c acuaaaggug ug   a
||  |||     ||||||| ||| ||||| ||   ||||||||| || ||||||| ||||||||||||||  ||||||||||| |||||   || | |||||||||| ||   a
cg  guu     gagcuug cuu cucuc ca   cugcgaguu uc acuucCU UGUUAUAGGAACUU  Uuguuaacuaa gucuu   gu g ugauuuccau ac   c
  cu   auuaa       a   a     c  aaa         u  a       A              AC           c     cau  a c          g  aua 

Annotation confidence High

Genome context

GL348713.1: 17336043-17336268 [-]

Mature aly-miR773b-5p

• Accession: MIMAT0017683
• Description: Arabidopsis lyrata aly-miR773b-5p mature miRNA
• Sequence: 53 - AGGCAAUAUCUUUGAACAAACAGU - 76
• Evidence: experimental ; Illumina [1]

Mature aly-miR773b-3p

• Accession: MIMAT0017684
• Description: Arabidopsis lyrata aly-miR773b-3p mature miRNA
• Sequence: 154 - UCAUUCAAGGAUAUUGUAUC - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089