miRBase entry: aly-MIR3433

Stem-loop aly-MIR3433


Accession
MI0014643
Description
Arabidopsis lyrata aly-MIR3433 precursor miRNA


Sequence

16 reads, 558 reads per million, 1 experiments
ugaauaaaaugacuuaaacugcgguuacguGGUCAUUUGAGAACUGUGAUGaguauacaaugguuuuuaugcucacgacaauuuucaaagcaucucuauguuuaugcucaUCACAGUUCUUGAUUACCCACuaaaccgauguuuaaaaaaccuuuauguuua
.............((((((..(((((..((((....(((((((((((((((((((((..((((.....(((((...((......))..)))))..))))...)))))))))))))))))))))....))))..)))))..))))))................

Structure
---ugaauaaaaugac      ug     ac    UCAU                     -ca    uuuuu     cac  ca 
                uuaaac  cgguu  guGG    UUGAGAACUGUGAUGaguaua   augg     augcu   ga  a
                ||||||  |||||  ||||    |||||||||||||||||||||   ||||     |||||   ||   
                aauuug  gccaa  CACC    AGUUCUUGACACUacucguau   uauc     uacga   cu  u
auuuguauuuccaaaa      ua     au    CAUU                     uug    ---uc     -aa  uu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 18060447-18060608 [+]

Database links

Mature aly-miR3433-5p

Accession MIMAT0017685
Description Arabidopsis lyrata aly-miR3433-5p mature miRNA
Sequence 31 - GGUCAUUUGAGAACUGUGAUG - 51
Evidence experimental
Illumina [1]

Mature aly-miR3433-3p

Accession MIMAT0017686
Description Arabidopsis lyrata aly-miR3433-3p mature miRNA
Sequence 111 - UCACAGUUCUUGAUUACCCAC - 131
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089