Stem-loop aly-MIR3433

Accession

MI0014643

Description

Arabidopsis lyrata aly-MIR3433 precursor miRNA

Sequence

47821 reads, 732.0 reads per million, 11 experiments

ugaauaaaaugacuuaaacugcgguuaCGUGGUCAUUUGAGAACUGugaugaguauacaaugguuuuuaugcucacgacaauuuucaaagcaucucuauguuuaugcucaUCACAGUUCUUGAUUACCCAcuaaaccgauguuuaaaaaaccuuuauguuua
.............((((((..(((((..((((....(((((((((((((((((((((..((((.....(((((...((......))..)))))..))))...)))))))))))))))))))))....))))..)))))..))))))................

Structure

---ugaauaaaaugac      ug     aC    UCAU                     -ca    uuuuu     cac  ca 
                uuaaac  cgguu  GUGG    UUGAGAACUGugaugaguaua   augg     augcu   ga  a
                ||||||  |||||  ||||    |||||||||||||||||||||   ||||     |||||   ||   
                aauuug  gccaa  cACC    AGUUCUUGACACUacucguau   uauc     uacga   cu  u
auuuguauuuccaaaa      ua     au    CAUU                     uug    ---uc     -aa  uu 

Annotation confidence Medium

Genome context

GL348714.1: 18060447-18060608 [+]

Mature aly-miR3433-5p

• Accession: MIMAT0017685
• Description: Arabidopsis lyrata aly-miR3433-5p mature miRNA
• Sequence: 28 - CGUGGUCAUUUGAGAACUG - 46
• Evidence: experimental ; Illumina [1]

Mature aly-miR3433-3p

• Accession: MIMAT0017686
• Description: Arabidopsis lyrata aly-miR3433-3p mature miRNA
• Sequence: 111 - UCACAGUUCUUGAUUACCCA - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089