Stem-loop aly-MIR848

Accession

MI0014645

Description

Arabidopsis lyrata aly-MIR848 precursor miRNA

Literature search

1 open access papers mention aly-MIR848
(1 sentences)

Sequence

518 reads, 186.0 reads per million, 11 experiments

uAGUUUCGACUUCCACAgccuuuauauagcuuggcaaucccaugucaaauaaggcaaagaagaggaacccaagguauguuucucauuugccuucuuUGACAUGGGACUAACAGACUAa
..........................(((.(((..(.((((((((((((.((((((((...(((((((.........))))))).)))))))).)))))))))))).)..))).))).

Structure

uAGUUUCGACUUCCACAgccuuuaua   c   gc a            u        gaa       cca 
                          uag uug  a ucccaugucaaa aaggcaaa   gaggaac   a
                          ||| |||  | |||||||||||| ||||||||   |||||||   g
                          AUC GAC  U AGGGUACAGUuu uuccguuu   cucuuug   g
-------------------------a   A   AA C            c        --a       uau 

Annotation confidence Low

Genome context

GL348718.1: 5606276-5606393 [-]

Mature aly-miR848-5p

• Accession: MIMAT0017689
• Description: Arabidopsis lyrata aly-miR848-5p mature miRNA
• Sequence: 2 - AGUUUCGACUUCCACA - 17
• Evidence: experimental ; Illumina [1]

Mature aly-miR848-3p

• Accession: MIMAT0017690
• Description: Arabidopsis lyrata aly-miR848-3p mature miRNA
• Sequence: 97 - UGACAUGGGACUAACAGACUA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089