Stem-loop aly-MIR869

Accession

MI0014648

Description

Arabidopsis lyrata aly-MIR869 precursor miRNA

Sequence

1746 reads, 369.0 reads per million, 7 experiments

guaugcucaccacacagauuuccauacaguaaaagaaaguaucacuuaucUCAACCCUAGUGAUUGGACCAGUacugugcucaucauaauugagccauaauucacgauuccucaucagauacaaagucacaaccuuauauugucccuuguuucuaaaccaaucucacagauuaugauggcuuuguuucugaugaaggauuuuggauuguuucuuaacacugagaagcacauuguugguUCAAUUCCUGGGUUUGAGAUaauugacacuucuuauaccguaugaaaacauguguggugggcuuac
(((.((((((((((((..(((.(((((.(((.(((((.((.(((.(((((((((.(((((.(((((((((((((.((((((..(((...(((((..((((((((.(((((.((((((((.(((((((((.....(((((((((...(((.........)))....))))..)))))))))))))).)))))))).))))).))))))))..)))))...)))..)))))).))))))))))))).))))).))))))))).))).))))))).))).))))).)))..)))))))))))).)))

Structure

   u            ga   c     a   a     a  a   c         C     U             c      ca   uaa     cc        c     c        u         caacc     --    -ccc   uuu 
gua gcucaccacaca  uuu cauac gua aagaa gu uca uuaucUCAA CCUAG GAUUGGACCAGUa ugugcu  uca   uugag  auaauuca gauuc ucaucaga acaaaguca     uuaua  uugu    uug   c
||| ||||||||||||  ||| ||||| ||| ||||| || ||| ||||||||| ||||| ||||||||||||| ||||||  |||   |||||  |||||||| ||||| |||||||| |||||||||     |||||  ||||    |||   u
cau cggguggugugu  aaa guaug cau uucuu ca agu aaUAGAGUU GGGUC UUAACUugguugu acacga  agu   aauuc  uguuaggu uuagg aguagucu uguuucggu     aguau  gaca    aac   a
   u            ac   a     c   a     -  c   u         U     C             u      ag   cac     uu        u     a        u         -----     ua    cucu   caa 

Annotation confidence Medium

Genome context

GL348719.1: 23046984-23047287 [+]

Mature aly-miR869-5p

• Accession: MIMAT0017695
• Description: Arabidopsis lyrata aly-miR869-5p mature miRNA
• Sequence: 51 - UCAACCCUAGUGAUUGGACCAGU - 73
• Evidence: experimental ; Illumina [1]

Mature aly-miR869-3p

• Accession: MIMAT0017696
• Description: Arabidopsis lyrata aly-miR869-3p mature miRNA
• Sequence: 239 - UCAAUUCCUGGGUUUGAGAU - 258
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089