Stem-loop aly-MIR3434

Accession

MI0014649

Description

Arabidopsis lyrata aly-MIR3434 precursor miRNA

Literature search

1 open access papers mention aly-MIR3434
(1 sentences)

Sequence

17030 reads, 846.0 reads per million, 12 experiments

gcggauaacaccuuaaggaaggauuguuuuuguuuuauagguuaacuguggugguaaauuuuagcacucggCUGAUUCUCUGAUUUUGAACAgggcuuccuuaagucagaucauuggucucucucucaaguaacuuaggguuugaaaaacagcuucuccagucagcaucuuacccugcuccucaacacucagcaaauccacaaauagaaacgagucguugcuucggaaagccuuguuCAAAAUCAGAGAAUCAACCaagugauaaaauuuaccaccacaguuaaccuauaaaacaaaaacaauccuuccuuaaguuguuguugc
(((.((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((.((((.((.((((((((((((((((((((((((((((...((..(((((...)))))..))...........((((((..((......(((.....))).....))..)))))).....((((((((.....................)))).))))....)).)))))))))))))))))))))))))).)).)))).)))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))

Structure

   g      c                                                    g    c  C                          -  ------------uuaagucagaucauuggucucucucucaaguaacu      uu  aaaaca   u 
gcg auaaca cuuaaggaaggauuguuuuuguuuuauagguuaacuguggugguaaauuuua cacu gg UGAUUCUCUGAUUUUGAACAgggcuu cc                                               uagggu  ga      gcu c
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||                                               ||||||  ||      ||| u
cgu uguugu gaauuccuuccuaacaaaaacaaaauauccaauugacaccaccauuuaaaau guga CC ACUAAGAGACUAAAACuuguuccgaa gg                                               guccca  cu      uga c
   -      u                                                    a    a  A                          a  cuucguugcugagcaaagauaaacaccuaaacgacucacaacuccuc      uu  -acgac   c 

Annotation confidence Medium

Genome context

GL348718.1: 9536201-9536524 [-]

Mature aly-miR3434-5p

• Accession: MIMAT0017697
• Description: Arabidopsis lyrata aly-miR3434-5p mature miRNA
• Sequence: 72 - CUGAUUCUCUGAUUUUGAACA - 92
• Evidence: experimental ; Illumina [1]

Mature aly-miR3434-3p

• Accession: MIMAT0017698
• Description: Arabidopsis lyrata aly-miR3434-3p mature miRNA
• Sequence: 238 - CAAAAUCAGAGAAUCAACC - 256
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089