Stem-loop aly-MIR3437

Accession

MI0014653

Description

Arabidopsis lyrata aly-MIR3437 precursor miRNA

Sequence

2927 reads, 329.0 reads per million, 11 experiments

gcauaauauugccugacaaaaaacaaggauccACGGAUUUAGGAAUGGGAACGUUcucugugucccagagcacauucugcaaaacaagugugcuuugggacaccgagaagguucccauuccaaaAUCGGUGGAUCUUGUUUUUUGUcaggcaauauuaugc
(((((((((((((((((((((((((((.((((((.(((((.(((((((((((.(((((.(((((((((((((((((.((.....))))))))))))))))))).))))).))))))))))).))))).)))))))))))))))))))))))))))))))))

Structure

                           g      G     A           G     u                 c  c 
gcauaauauugccugacaaaaaacaag auccAC GAUUU GGAAUGGGAAC UUcuc gugucccagagcacauu ug a
||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||| ||||||||||||||||| || a
cguauuauaacggacUGUUUUUUGUUC UAGGUG CUAaa ccuuacccuug aagag cacaggguuucguguga ac a
                           -      G     a           g     c                 -  a 

Annotation confidence Low

Genome context

GL348717.1: 20829833-20829993 [-]

Mature aly-miR3437-5p

• Accession: MIMAT0017705
• Description: Arabidopsis lyrata aly-miR3437-5p mature miRNA
• Sequence: 33 - ACGGAUUUAGGAAUGGGAACGUU - 55
• Evidence: experimental ; Illumina [1]

Mature aly-miR3437-3p

• Accession: MIMAT0017706
• Description: Arabidopsis lyrata aly-miR3437-3p mature miRNA
• Sequence: 125 - AUCGGUGGAUCUUGUUUUUUGU - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089