miRBase entry: aly-MIR3439

Stem-loop aly-MIR3439


Accession
MI0014655
Description
Arabidopsis lyrata aly-MIR3439 precursor miRNA


Sequence

984 reads, 34310 reads per million, 1 experiments
guguaaaauccuuguuuucgcgguuuagcuaaacaguaaacguaaaccgauguuuuaauuUUGGGGUUUCGAAAUCAAGAGgucgaccaaaccgaugauaugucaucuuaaagcuaagagacuauuaauagugucuuaaaaacacuaaauccucguuuguauauccauuggcucgcauacggcaaaaucauacacaauaaccugcgugcuucuauugagacucugaauaaucauguucuuugucagaugugcccacuaaaacaauuaagugugaugguguugauuuggucgaccuUCUGAUUUUCGAAGUCCCAAAAucuaaacucauguuuauguuuaauguuuaguagccacgaggacaaggguucuacac
(((((.((((((((((((((.((((..((((((((.(((((((((((.((.((((..((((((((((((((((((((.(((((((((((((.((((((((.(((.(((((....))))))))))))).((((((.......))))))...........(((((((....(((.((((...((..................)))))).)))((....))(((...(((((....)))))...))).))))))).(((((..(((......)))..)))))))).))))))))))))).))).)))))))))))))))))..))))))..))))))))))).)))))))))))).)))))))))))))).)))))

Structure
     a              c    ua        g           -c  u    ua                 -   A             c   --------------------------------------------------------------------------------------------------------------------------------------------------------     u   a     a 
gugua aauccuuguuuucg gguu  gcuaaaca uaaacguaaac  ga guuu  auuUUGGGGUUUCGAAA UCA GAGgucgaccaaa cga                                                                                                                                                        ugaua guc ucuua a
||||| |||||||||||||| ||||  |||||||| |||||||||||  || ||||  ||||||||||||||||| ||| ||||||||||||| |||                                                                                                                                                        ||||| ||| |||||  
cacau uugggaacaggagc ccga  ugauuugu auuuguauuug  cu caaa  uAAAACCCUGAAGCUUU AGU Uuccagcugguuu guu                                                                                                                                                        auuau cag agaau g
     c              a    --        a           ua  -    uc                 U   C             a   gugguagugugaauuaacaaaaucacccguguagacuguuucuuguacuaauaagucucagaguuaucuucgugcguccaauaacacauacuaaaacggcauacgcucgguuaccuauauguuugcuccuaaaucacaaaaauucugugaua     -   -     c 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
GL348716.1: 17970236-17970608 [+]

Database links

Mature aly-miR3439-5p

Accession MIMAT0017709
Description Arabidopsis lyrata aly-miR3439-5p mature miRNA
Sequence 61 - UUGGGGUUUCGAAAUCAAGAG - 81
Evidence experimental
Illumina [1]
Database links

Mature aly-miR3439-3p

Accession MIMAT0017710
Description Arabidopsis lyrata aly-miR3439-3p mature miRNA
Sequence 296 - UCUGAUUUUCGAAGUCCCAAAA - 317
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089