Stem-loop aly-MIR3442

Accession

MI0014658

Description

Arabidopsis lyrata aly-MIR3442 precursor miRNA

Sequence

373 reads, 64.0 reads per million, 10 experiments

agacugaaauuuuacauuuuuauacuAAACACCAUGUUUAGACUCUGAauuuuuuccauauaauuuuauuuuaaaaggcaaagacuuuuuuccuaaaucggucucaaggacuuauuuauuauauggaaaaaaaUUCAGAGUCUAAACAUGGUGUUUaguauaaaaauguaaaauuucagucu
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((...........(((.((((....)))))))((((.(((((...))))).))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                       -         uuuauuuuaaaaggcaaagacuuuuuuccu    c     c 
agacugaaauuuuacauuuuuauacuAAACACCAUGUUUAGACUCUGAauuuuuu ccauauaau                              aaau ggucu  
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                              |||| ||||| a
ucugacuuuaaaauguaaaaauaugaUUUGUGGUACAAAUCUGAGACUUaaaaaa gguauauua                              uuua ucagg  
                                                       a         ------------------------------    u     a 

Annotation confidence Medium

Genome context

GL348715.1: 19148701-19148882 [-]

Mature aly-miR3442-5p

• Accession: MIMAT0017717
• Description: Arabidopsis lyrata aly-miR3442-5p mature miRNA
• Sequence: 27 - AAACACCAUGUUUAGACUCUGA - 48
• Evidence: experimental ; Illumina [1]

Mature aly-miR3442-3p

• Accession: MIMAT0017718
• Description: Arabidopsis lyrata aly-miR3442-3p mature miRNA
• Sequence: 134 - UUCAGAGUCUAAACAUGGUGUUU - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089