Stem-loop aly-MIR3444a

Accession

MI0014660

Description

Arabidopsis lyrata aly-MIR3444a precursor miRNA

Sequence

1107 reads, 64.0 reads per million, 11 experiments

uauguauccuuuguaaucucuuuauaUUGGGAGCUCGAUGAGAUCGACccuaaccgagccuagauaucgagauuugguucgggUCAAUCUCAUCAAUCUCCCAauacuuuacaacauauaua
(((((((...((((((........(((((((((...((((((((.(((((.(((((((.((........)).))))))).))))).))))))))...)))))))))..)))))).)))))))

Structure

       ccu      ucucuuua         CUC        C     u       c  aga 
uauguau   uuguaa        uaUUGGGAG   GAUGAGAU GACcc aaccgag cu   u
|||||||   ||||||        |||||||||   |||||||| ||||| ||||||| ||    
auauaua   aacauu        auaACCCUC   CUACUCUA CUggg uugguuu ga   a
       --c      ------uc         UAA        A     c       a  gcu 

Annotation confidence Medium

Genome context

GL348720.1: 18879825-18879946 [+]

Mature aly-miR3444a-5p

• Accession: MIMAT0017721
• Description: Arabidopsis lyrata aly-miR3444a-5p mature miRNA
• Sequence: 27 - UUGGGAGCUCGAUGAGAUCGAC - 48
• Evidence: experimental ; Illumina [1]

Mature aly-miR3444a-3p

• Accession: MIMAT0017722
• Description: Arabidopsis lyrata aly-miR3444a-3p mature miRNA
• Sequence: 84 - UCAAUCUCAUCAAUCUCCCA - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089