Stem-loop aly-MIR3447

Accession

MI0014663

Description

Arabidopsis lyrata aly-MIR3447 precursor miRNA

Sequence

64 reads, 2232 reads per million, 1 experiments

guucagagacugauuCGUGACGAACAUAAUCAAACGaugaaaccauuuuaagcucaucgagagauuuccuuaaaauugucucguugUUUGAGUGUGUUUGUUAUGAAuaagacucugaac
((((((((.((.((((((((((((((((.(((((((((((.((.((((((((...(((....)))...)))))))).)).))))))))))).)))))))))))))))).)).))))))))

Structure

        a  g                A           a  c        cuc   g 
guucagag cu auuCGUGACGAACAUA UCAAACGauga ac auuuuaag   auc a
|||||||| || |||||||||||||||| ||||||||||| || ||||||||   |||  
caagucuc ga uAAGUAUUGUUUGUGU AGUUUguugcu ug uaaaauuc   uag g
        a  a                G           c  u        cuu   a 

Annotation confidence Low

Genome context

GL348716.1: 12947001-12947120 [-]

Mature aly-miR3447-5p

• Accession: MIMAT0017729
• Description: Arabidopsis lyrata aly-miR3447-5p mature miRNA
• Sequence: 16 - CGUGACGAACAUAAUCAAACG - 36
• Evidence: experimental ; Illumina [1]

Mature aly-miR3447-3p

• Accession: MIMAT0017730
• Description: Arabidopsis lyrata aly-miR3447-3p mature miRNA
• Sequence: 87 - UUUGAGUGUGUUUGUUAUGAA - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089