Stem-loop aly-MIR3449

Accession

MI0014665

Description

Arabidopsis lyrata aly-MIR3449 precursor miRNA

Sequence

115 reads, 134.0 reads per million, 7 experiments

cuuuuaguuuucauucugagauccAAUAUCUAGAUUGCUUUCGGUCugucugauugucagauuaauaauauguuuggucaaaguuucaaccaaucagacagaUAGAAAGCAAUCUGGAUAUUGGAUCucagaaugaaaaugaccagag
((....((((((((((((((((((((((((((((((((((((.(((((((((((((...((((((........))))))...........))))))))))))).))))))))))))))))))))))))))))))))))))....))..

Structure

--  uuua                                    G             --------uca      uaa 
  cu    guuuucauucugagauccAAUAUCUAGAUUGCUUUC GUCugucugauug           gauuaa   u
  ||    |||||||||||||||||||||||||||||||||||| |||||||||||||           ||||||    
  ga    uaaaaguaagacuCUAGGUUAUAGGUCUAACGAAAG Uagacagacuaac           cugguu   a
ga  ccag                                    A             caacuuugaaa      ugu 

Annotation confidence Medium

Genome context

GL348714.1: 708072-708219 [+]

Mature aly-miR3449-5p

• Accession: MIMAT0017733
• Description: Arabidopsis lyrata aly-miR3449-5p mature miRNA
• Sequence: 25 - AAUAUCUAGAUUGCUUUCGGUC - 46
• Evidence: experimental ; Illumina [1]

Mature aly-miR3449-3p

• Accession: MIMAT0017734
• Description: Arabidopsis lyrata aly-miR3449-3p mature miRNA
• Sequence: 103 - UAGAAAGCAAUCUGGAUAUUGGAUC - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089