Stem-loop ath-MIR773b

Accession

MI0014666

Description

Arabidopsis thaliana ath-MIR773b precursor miRNA

Literature search

4 open access papers mention ath-MIR773b
(10 sentences)

Sequence

6173 reads, 40.0 reads per million, 172 experiments

gguugaagguggcaauaaccucaaauauaucagaggguGUAGAUACUCAACGACUAUAGGaggcaauaacuugagcaaacaauugauugcagaaauccaucgacuaaagcugucaccuguuugauuccagCUUUUGUCUCCUUACCUGUUGAGugucuaaacucucugguacguucauaguuguugcugccuuucgcu
(((.(((((((((((((((....(((.(((((((((((.(((((((((((((.....(((((((((...((.(((((((((..((((.((.....((....)).....)).))))..)))))).))).))...)))))))))....))))))))))))).))))))))))).)))....))))))))))))))).)))

Structure

   u               cuca   a           G             ACUAU         uaa  u   -      au    u  agaaa  c 
ggu gaagguggcaauaac    aau uaucagagggu UAGAUACUCAACG     AGGaggcaa   cu gag caaaca  ugau gc     uc a
||| |||||||||||||||    ||| ||||||||||| |||||||||||||     |||||||||   || ||| ||||||  |||| ||     ||  
ucg uuuccgucguuguug    uug auggucucuca aucuguGAGUUGU     UCCUCUGUU   ga cuu guuugu  acug cg     ag u
   c               auac   c           a             -CCAU         UUC  c   a      cc    u  aaauc  c 

Annotation confidence Medium

Genome context

chr1: 13050667-13050864 [-]

Mature ath-miR773b-5p

• Accession: MIMAT0017735
• Description: Arabidopsis thaliana ath-miR773b-5p mature miRNA
• Sequence: 39 - GUAGAUACUCAACGACUAUAGG - 60
• Evidence: experimental ; Illumina [1]

Mature ath-miR773b-3p

• Accession: MIMAT0017736
• Description: Arabidopsis thaliana ath-miR773b-3p mature miRNA
• Sequence: 131 - CUUUUGUCUCCUUACCUGUUGAG - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089