Stem-loop ath-MIR3434

Accession

MI0014667

Description

Arabidopsis thaliana ath-MIR3434 precursor miRNA

Sequence

aaauuccuuauauugcagauaacaccuuaaggaagguuuguuuuuguuuuacagguuaacuguggugguaaauuuuaucACUUGGCUGAUUCUAUUAUUuugagcaaggcuuccuaaagucagaucauuggucucucucucaaguaacuuagguuugaaaaagcagcuucuccagucagcaucuuacccuucucacuacucagcaaauccacaaauagaaacgagucguugcuucggaagccuuguucaaaaUCAGAGUAUCAGCCAUGUGAuaaaauuaacaaccagaguuaacauauaaaacuaaaacaauccuuccuuaaguuguuguugcuuaauuugggaauuu
((((((((......(((.((((((.(((((((((((.(((((((.((((((...(((((((.((((.((.(((((((((((.((((((((.((...((((((((((((((((((.....(((((((...(((..((......))..)))..)))))))..(((((((..(((...((........................................))...)))..))))))).))))))))))))))))))...)).)))))))).))))))))))).)).)))).)))))))...)))))).))))))).))))))))))).))))))))).......))))))))

Structure

        -uauauu   g      c           u       u      cag       g    g  a           U        U  AUU                  ------------------------------------------------------------------------uaaag       auu   cu  cu 
aaauuccu       gca auaaca cuuaaggaagg uuguuuu guuuua   guuaacu uggu gu aauuuuaucAC UGGCUGAU CU   AUUuugagcaaggcuucc                                                                             ucagauc   ggu  cu  c
||||||||       ||| |||||| ||||||||||| ||||||| ||||||   ||||||| |||| || ||||||||||| |||||||| ||   ||||||||||||||||||                                                                             |||||||   |||  ||   
uuuaaggg       cgu uguugu gaauuccuucc aacaaaa caaaau   caauuga acca ca uuaaaauAGUG ACCGACUA GA   Uaaaacuuguuccgaagg                                                                             aguuugg   uca  ga  u
        uuuaauu   -      u           u       u      aua       g    a  a           U        U  GAC                  cuucguugcugagcaaagauaaacaccuaaacgacucaucacucuucccauucuacgacugaccucuucgacgaaaa       -au   au  ac 

Annotation confidence Low

Genome context

chr5: 7583055-7583403 [-]

Mature ath-miR3434-5p

• Accession: MIMAT0017737
• Description: Arabidopsis thaliana ath-miR3434-5p mature miRNA
• Sequence: 80 - ACUUGGCUGAUUCUAUUAUU - 99
• Evidence: experimental ; Illumina [1]

Mature ath-miR3434-3p

• Accession: MIMAT0017738
• Description: Arabidopsis thaliana ath-miR3434-3p mature miRNA
• Sequence: 253 - UCAGAGUAUCAGCCAUGUGA - 272
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089