Stem-loop rno-mir-3551

Accession

MI0015407

Description

Rattus norvegicus rno-mir-3551 precursor miRNA

Literature search

1 open access papers mention rno-mir-3551
(1 sentences)

Sequence

47 reads, 12 reads per million, 13 experiments

uaugggcaguacugUCUUCACCAUGGUGUUUUUGACAUaaguagcuaUGAAAUUCACCAUGGUGGGUAAAguaaggcucaua
(((((((..((((...((((((((((((..(((..((((......)))))))..))))))))))))...))))..)))))))

Structure

       ag    gUC            UU   GA    ag 
uaugggc  uacu   UUCACCAUGGUG  UUU  CAUa  u
|||||||  ||||   ||||||||||||  |||  ||||   
auacucg  augA   GGGUGGUACCAC  AAA  GUau  a
       ga    AAU            UU   --    cg 

Annotation confidence Low

Genome context

chrX: 151272824-151272905 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-3551

Mature rno-miR-3551-5p

• Accession: MIMAT0017809
• Description: Rattus norvegicus rno-miR-3551-5p mature miRNA
• Sequence: 15 - UCUUCACCAUGGUGUUUUUGACAU - 38
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3551-3p

• Accession: MIMAT0017810
• Description: Rattus norvegicus rno-miR-3551-3p mature miRNA
• Sequence: 48 - UGAAAUUCACCAUGGUGGGUAAA - 70
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249