Stem-loop cin-mir-1

Accession

MI0015480

Description

Ciona intestinalis cin-mir-1 precursor miRNA

Literature search

2 open access papers mention cin-mir-1
(3 sentences)

Sequence

9878 reads, 3921 reads per million, 2 experiments

ACCUACUUCUUUACAUCUUCauagacuaagaauaccguggcugacauuucaauugcaguuccggcaacuuauaUGGAAUGUAAAGAAGUAUGCGU
...(((((((((((((.((((((...((((....(((.(((((.((.......))))))).)))...))))))))))))))))))))))).....

Structure

--ACC             C      gac    aaua   u     a  uu 
     UACUUCUUUACAU UUCaua   uaag    ccg ggcug ca  u
     ||||||||||||| ||||||   ||||    ||| ||||| ||  c
     AUGAAGAAAUGUA AGGUau   auuc    ggc uugac gu  a
UGCGU             -      ---    -aac   c     -  ua 

Annotation confidence Not enough data

Genome context

1q: 5268751-5268845 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-1

Mature cin-miR-1-5p

• Accession: MIMAT0016392
• Description: Ciona intestinalis cin-miR-1-5p mature miRNA
• Sequence: 1 - ACCUACUUCUUUACAUCUUC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-1-3p

• Accession: MIMAT0016393
• Description: Ciona intestinalis cin-miR-1-3p mature miRNA
• Sequence: 74 - UGGAAUGUAAAGAAGUAUGCGU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39