Stem-loop cin-mir-3598

Accession

MI0015484

Description

Ciona intestinalis cin-mir-3598 precursor miRNA

Sequence

25618 reads, 2062.0 reads per million, 9 experiments

UCACAGUGGUUAUAUACUGCCUGUgguauuuacgaacAUGCAGUAUAUCCAUCGUGC
.(((.((((..(((((((((.(((.((....))..))).))))))))))))).))).

Structure

U   A    UU         C   -g  a 
 CAC GUGG  AUAUACUGC UGU  gu u
 ||| ||||  ||||||||| |||  ||  
 GUG UACC  UAUAUGACG Aca  ca u
C   C    --         U   ag  u 

Annotation confidence High

Genome context

ref|NC_020179.1|: 3281622-3281678 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-3598

Mature cin-miR-3598-5p

• Accession: MIMAT0016399
• Description: Ciona intestinalis cin-miR-3598-5p mature miRNA
• Sequence: 1 - UCACAGUGGUUAUAUACUGCCUGU - 24
• Evidence: experimental ; Illumina [1]

Mature cin-miR-3598-3p

• Accession: MIMAT0016400
• Description: Ciona intestinalis cin-miR-3598-3p mature miRNA
• Sequence: 38 - AUGCAGUAUAUCCAUCGUGC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39