Stem-loop cin-mir-29

Accession

MI0015485

Description

Ciona intestinalis cin-mir-29 precursor miRNA

Literature search

1 open access papers mention cin-mir-29
(12 sentences)

Sequence

1440 reads, 327.0 reads per million, 3 experiments

ACCGUCUCCUUUUGGUGCAGGAguuuguauaugaacaucUAGCACCAUUAGAAAAUGGU
(((((...((..(((((((((.((((......)))).))).))))))..))...)))))

Structure

     CUC  UU      -   A    gu 
ACCGU   CU  UGGUGC AGG guuu  a
|||||   ||  |||||| ||| ||||   
UGGUA   GA  ACCACG Ucu caag  u
     AAA  UU      A   a    ua 

Annotation confidence High

Genome context

ref|NC_020177.1|: 4741540-4741598 [+]

Mature cin-miR-29-5p

• Accession: MIMAT0016401
• Description: Ciona intestinalis cin-miR-29-5p mature miRNA
• Sequence: 1 - ACCGUCUCCUUUUGGUGCAGGA - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-29-3p

• Accession: MIMAT0016402
• Description: Ciona intestinalis cin-miR-29-3p mature miRNA
• Sequence: 40 - UAGCACCAUUAGAAAAUGGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39