Stem-loop cin-mir-125

Accession

MI0015487

Description

Ciona intestinalis cin-mir-125 precursor miRNA

Literature search

3 open access papers mention cin-mir-125
(43 sentences)

Sequence

42738 reads, 2637.0 reads per million, 9 experiments

UCCCUGAGACCCUAAAACGUGAgacgguuucACGUAUUCGGCUCUCAGU
...((((((.((.((.((((((((...)))))))).)).)).)))))).

Structure

UCC      C  U  A        c 
   CUGAGA CC AA ACGUGAga  
   |||||| || || |||||||| g
   GACUCU GG UU UGCAcuuu  
--U      C  C  A        g 

Annotation confidence Medium

Genome context

ref|NC_020175.1|: 1022414-1022462 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-125

Mature cin-miR-125-5p

• Accession: MIMAT0016405
• Description: Ciona intestinalis cin-miR-125-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAAAACGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-125-3p

• Accession: MIMAT0016406
• Description: Ciona intestinalis cin-miR-125-3p mature miRNA
• Sequence: 32 - ACGUAUUCGGCUCUCAGU - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39