Stem-loop cin-mir-182

Accession

MI0015490

Description

Ciona intestinalis cin-mir-182 precursor miRNA

Literature search

1 open access papers mention cin-mir-182
(1 sentences)

Sequence

42991 reads, 3351.0 reads per million, 8 experiments

CUUGGCAAAAUAUAGAACUCACGUUggauguuaaugagauccaGUGGGCUGUAUUUUGCCGAC
.((((((((((((((..(((((..(((((.((...)).)))))))))))))))))))))))).

Structure

C              AA     GU     g  a 
 UUGGCAAAAUAUAG  CUCAC  Uggau uu  
 ||||||||||||||  |||||  ||||| || a
 AGCCGUUUUAUGUC  GGGUG  accua ag  
C              --     --     g  u 

Annotation confidence High

Genome context

ref|NW_004190416.1|: 542172-542234 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-182

Mature cin-miR-182-5p

• Accession: MIMAT0016411
• Description: Ciona intestinalis cin-miR-182-5p mature miRNA
• Sequence: 1 - CUUGGCAAAAUAUAGAACUCACGUU - 25
• Evidence: experimental ; Illumina [1]

Mature cin-miR-182-3p

• Accession: MIMAT0016412
• Description: Ciona intestinalis cin-miR-182-3p mature miRNA
• Sequence: 44 - GUGGGCUGUAUUUUGCCGAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39