Stem-loop cin-mir-367

Accession

MI0015492

Description

Ciona intestinalis cin-mir-367 precursor miRNA

Sequence

22000 reads, 4853.0 reads per million, 9 experiments

AGUGCUAUUCAUGUGCAAGAGUuaauacagccgugcUAUUGCACAUUGGAAUGGUA
..((((((((((((((((.(((............))).))))))))..))))))))

Structure

AG        --        G   uaaua 
  UGCUAUUC  AUGUGCAA AGU     c
  ||||||||  |||||||| |||      
  AUGGUAAG  UACACGUU Ucg     a
--        GU        A   ugccg 

Annotation confidence Medium

Genome context

ref|NW_004190359.1|: 5195-5250 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-367

Mature cin-miR-367-5p

• Accession: MIMAT0016415
• Description: Ciona intestinalis cin-miR-367-5p mature miRNA
• Sequence: 1 - AGUGCUAUUCAUGUGCAAGAGU - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-367-3p

• Accession: MIMAT0016416
• Description: Ciona intestinalis cin-miR-367-3p mature miRNA
• Sequence: 37 - UAUUGCACAUUGGAAUGGUA - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39