Stem-loop cin-mir-375

Accession

MI0015493

Description

Ciona intestinalis cin-mir-375 precursor miRNA

Literature search

1 open access papers mention cin-mir-375
(1 sentences)

Sequence

2 reads, 2 reads per million, 1 experiments

ACGUUGGUCGCACGAUCAAAgcgucauuauuguucuggcgucauuaauugcgucauaaaaugcCUUGUUCGUUCGGCUCGCGU
((((.(((((.((((.(((.((((..(((......(((((.((.....)))))))))).)))).))).)))).))))).))))

Structure

    U     C    U   A    ca   uuguuc     u  u 
ACGU GGUCG ACGA CAA gcgu  uua      uggcg ca u
|||| ||||| |||| ||| ||||  |||      ||||| || a
UGCG UCGGC UGCU GUU cgua  aau      acugc gu a
    C     U    U   C    -a   ------     -  u 

Annotation confidence Not enough data

Genome context

7q: 439603-439685 [+]

Mature cin-miR-375-5p

• Accession: MIMAT0016417
• Description: Ciona intestinalis cin-miR-375-5p mature miRNA
• Sequence: 1 - ACGUUGGUCGCACGAUCAAA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-375-3p

• Accession: MIMAT0016418
• Description: Ciona intestinalis cin-miR-375-3p mature miRNA
• Sequence: 64 - CUUGUUCGUUCGGCUCGCGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39