Stem-loop cin-mir-4000a-1

Accession

MI0015500

Description

Ciona intestinalis cin-mir-4000a-1 precursor miRNA

Sequence

22460 reads, 2774.0 reads per million, 6 experiments

CGAAACUUGCGUGGAACAGGCUGuuagaauccaGCCUUUUCAUGUAAAUUUCCAU
.((((.((((((((((.((((((........)))))))))))))))).))))...

Structure

--C    C          C      uua 
   GAAA UUGCGUGGAA AGGCUG   g
   |||| |||||||||| ||||||    
   CUUU AAUGUACUUU UCCGac   a
UAC    A          -      cua 

Annotation confidence Not enough data

Genome context

ref|NC_020172.1|: 4076642-4076696 [+]

Mature cin-miR-4000a-3p

• Accession: MIMAT0016431
• Description: Ciona intestinalis cin-miR-4000a-3p mature miRNA
• Sequence: 34 - GCCUUUUCAUGUAAAUUUCCAU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39