Stem-loop cin-mir-4001g

Accession

MI0015518

Description

Ciona intestinalis cin-mir-4001g precursor miRNA

Sequence

cuuguuuaggauuugauucgguuuucuaguuguuuugaaaucuguaaaaUGGAACUUAUUUUGGACAGG
((((((((((((..(.(((.(((((.(((.(........).))).))))).))))..))))))))))))

Structure

            uu a   g     c   u guu 
cuuguuuaggau  g uuc guuuu uag u   u
||||||||||||  | ||| ||||| ||| |    
GGACAGGUUUUA  C AAG Uaaaa guc a   u
            UU -   G     u   u aag 

Annotation confidence Not enough data

Genome context

9q: 3696828-3696896 [+]

Mature cin-miR-4001g-3p

• Accession: MIMAT0016458
• Description: Ciona intestinalis cin-miR-4001g-3p mature miRNA
• Sequence: 50 - UGGAACUUAUUUUGGACAGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39