Stem-loop cin-mir-4003c

Accession

MI0015524

Description

Ciona intestinalis cin-mir-4003c precursor miRNA

Sequence

30 reads, 12 reads per million, 2 experiments

UGAGUUGGUUAUCAUUGUUGcaauguaaguaacagUAACGAUGUUAGUCAAUGCA
((.((((((((.(((((((((..(((.....)))))))))))).)))))))).))

Structure

  A        U         aa   a 
UG GUUGGUUA CAUUGUUGc  ugu a
|| |||||||| |||||||||  ||| g
AC UAACUGAU GUAGCAAUg  aca u
  G        U         --   a 

Annotation confidence Not enough data

Genome context

7q: 6151685-6151739 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from cin-mir-4003c

Mature cin-miR-4003c-5p

• Accession: MIMAT0016465
• Description: Ciona intestinalis cin-miR-4003c-5p mature miRNA
• Sequence: 1 - UGAGUUGGUUAUCAUUGUUG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4003c-3p

• Accession: MIMAT0016466
• Description: Ciona intestinalis cin-miR-4003c-3p mature miRNA
• Sequence: 36 - UAACGAUGUUAGUCAAUGCA - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39