Stem-loop cin-mir-4004

Accession

MI0015530

Description

Ciona intestinalis cin-mir-4004 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

GUGAGUUUGUUGUAUUGUGGUccauggcugucacuuauauacuacaacucaa
.((((((.((.(((((((((((...))))).)).....)))).)))))))).

Structure

G      U  U    -----  -     c 
 UGAGUU GU GUAU     UG UGGUc  
 |||||| || ||||     || ||||| a
 acucaa ca caua     ac gucgg  
a      -  u    uauuc  u     u 

Annotation confidence Not enough data

Genome context

1q: 7635858-7635909 [-]

Mature cin-miR-4004-5p

• Accession: MIMAT0016471
• Description: Ciona intestinalis cin-miR-4004-5p mature miRNA
• Sequence: 1 - GUGAGUUUGUUGUAUUGUGGU - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39