miRBase entry: cin-mir-4007

Stem-loop cin-mir-4007


Accession
MI0015540
Description
Ciona intestinalis cin-mir-4007 precursor miRNA


Sequence

40195 reads, 17 reads per million, 2 experiments
UUGACUUUCAAGAAUUAGGUuguaguuuugguuuaaaccuauuccuuagaaaguucaa
..((((((((((...((((((..............))))))...))).)))))))...

Structure
-UU       -   AAU      guaguu 
   GACUUUC AAG   UAGGUu      u
   ||||||| |||   ||||||       
   uugaaag uuc   auccaa      u
aac       a   cuu      auuugg 


Annotation confidence Not enough data
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Genome context
3p: 1538791-1538848 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4007
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4007-5p

Accession MIMAT0016486
Description Ciona intestinalis cin-miR-4007-5p mature miRNA
Sequence 1 - UUGACUUUCAAGAAUUAGGU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39