Stem-loop cin-mir-1502a

Accession

MI0015541

Description

Ciona intestinalis cin-mir-1502a precursor miRNA

Sequence

40187 reads, 15107 reads per million, 2 experiments

UUGAACUUUCUAAGGAAUAGguuuaaaccaaaacuacaaCCUAAUUCUUGAAAGUCAAC
((((.(((((.(((((.((((((..............)))))).)))))))))))))).

Structure

-    A     U     A      uaaacc 
 UUGA CUUUC AAGGA UAGguu      a
 |||| ||||| ||||| ||||||       
 AACU GAAAG UUCUU AUCCaa      a
C    -     -     A      caucaa 

Annotation confidence High

Genome context

3p: 1538791-1538849 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-1502a

Mature cin-miR-1502a-5p

• Accession: MIMAT0016487
• Description: Ciona intestinalis cin-miR-1502a-5p mature miRNA
• Sequence: 1 - UUGAACUUUCUAAGGAAUAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-1502a-3p

• Accession: MIMAT0016488
• Description: Ciona intestinalis cin-miR-1502a-3p mature miRNA
• Sequence: 40 - CCUAAUUCUUGAAAGUCAAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39