Stem-loop cin-mir-4008c

Accession

MI0015547

Description

Ciona intestinalis cin-mir-4008c precursor miRNA

Sequence

85 reads, 36 reads per million, 2 experiments

UGGCAGUGAUCGCAAGUUAGugcccuguuguuuugcauauacAGGGGCUAAAUUGCCUGCCA
((((((.....((((.(((((.(((((((((...)))...))))))))))).))))))))))

Structure

      UGAUC    G     g      ---   u 
UGGCAG     GCAA UUAGu cccugu   ugu  
||||||     |||| ||||| ||||||   ||| u
ACCGUC     CGUU AAUCG GGGAca   acg  
      -----    A     -      uau   u 

Annotation confidence Not enough data

Genome context

10q: 2148809-2148870 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cin-mir-4008c

Mature cin-miR-4008c-5p

• Accession: MIMAT0016499
• Description: Ciona intestinalis cin-miR-4008c-5p mature miRNA
• Sequence: 1 - UGGCAGUGAUCGCAAGUUAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4008c-3p

• Accession: MIMAT0016500
• Description: Ciona intestinalis cin-miR-4008c-3p mature miRNA
• Sequence: 43 - AGGGGCUAAAUUGCCUGCCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39