Stem-loop cin-mir-4011a

Accession

MI0015553

Description

Ciona intestinalis cin-mir-4011a precursor miRNA

Sequence

204315 reads, 19312.0 reads per million, 9 experiments

CACAGUGGAGGUAAAGAUUGUGgugaauuuaaugaacaCGAUUUUUGCUUUCCACUGC
..((((((((((((((((((((..............)))))))))))).)))))))).

Structure

CA        -            gugaau 
  CAGUGGAG GUAAAGAUUGUG      u
  |||||||| ||||||||||||       
  GUCACCUU CGUUUUUAGCac      u
-C        U            aaguaa 

Annotation confidence Medium

Genome context

ref|NW_004190597.1|: 10125-10182 [-]

Mature cin-miR-4011a-5p

• Accession: MIMAT0016508
• Description: Ciona intestinalis cin-miR-4011a-5p mature miRNA
• Sequence: 1 - CACAGUGGAGGUAAAGAUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4011a-3p

• Accession: MIMAT0016509
• Description: Ciona intestinalis cin-miR-4011a-3p mature miRNA
• Sequence: 39 - CGAUUUUUGCUUUCCACUGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39