Stem-loop cin-mir-4011a

Accession

MI0015553

Description

Ciona intestinalis cin-mir-4011a precursor miRNA

Sequence

176065 reads, 72409 reads per million, 2 experiments

CACAGUGGAGGUAAAGAUUGuggugaauuuaaugaacaCGAUUUUUGCUUUCCACUGC
..((((((((((((((((((((..............)))))))))))).)))))))).

Structure

CA        -            gugaau 
  CAGUGGAG GUAAAGAUUGug      u
  |||||||| ||||||||||||       
  GUCACCUU CGUUUUUAGCac      u
-C        U            aaguaa 

Annotation confidence Not enough data

Genome context

5q: 5615210-5615267 [+]

Mature cin-miR-4011a-5p

• Accession: MIMAT0016508
• Description: Ciona intestinalis cin-miR-4011a-5p mature miRNA
• Sequence: 1 - CACAGUGGAGGUAAAGAUUG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4011a-3p

• Accession: MIMAT0016509
• Description: Ciona intestinalis cin-miR-4011a-3p mature miRNA
• Sequence: 39 - CGAUUUUUGCUUUCCACUGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39