Stem-loop cin-mir-4012-1

Accession

MI0015555

Description

Ciona intestinalis cin-mir-4012-1 precursor miRNA

Sequence

5 reads, 3 reads per million, 2 experiments

AAGCUUAUGUUCAUGUAUGCuguguguauauaugugugguacagcauuauguauaugugagcua
.(((((((((.((((.((((((((..((((....)))).))))))))))))...))))))))).

Structure

A         --U    U        ug    u 
 AGCUUAUGU   CAUG AUGCugug  uaua a
 |||||||||   |||| ||||||||  ||||  
 ucgagugua   guau uacgacau  gugu u
a         uau    -        -g    g 

Annotation confidence Not enough data

Genome context

scaffold_67: 367730-367793 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-4012-1

Mature cin-miR-4012-5p

• Accession: MIMAT0016512
• Description: Ciona intestinalis cin-miR-4012-5p mature miRNA
• Sequence: 1 - AAGCUUAUGUUCAUGUAUGC - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39