miRBase entry: cin-mir-4014-1

Stem-loop cin-mir-4014-1


Accession
MI0015559
Description
Ciona intestinalis cin-mir-4014-1 precursor miRNA


Sequence

42998 reads, 4888.0 reads per million, 8 experiments
GCUACGCAGACUUUCUGUACUGuaauuugaaacaUUACAGAAAGCGUGUGUGUG
..((((((..(((((((((.(((........))).)))))))))..))))))..

Structure
GC      GA         C   aau 
  UACGCA  CUUUCUGUA UGu   u
  ||||||  ||||||||| |||    
  GUGUGU  GAAAGACAU aca   u
GU      GC         U   aag 


Annotation confidence High
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Genome context
ref|NC_020177.1|: 3135786-3135839 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4014-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4014-1-5p

Accession MIMAT0016518
Description Ciona intestinalis cin-miR-4014-1-5p mature miRNA
Sequence 1 - GCUACGCAGACUUUCUGUACUG - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4014-3p

Accession MIMAT0016519
Description Ciona intestinalis cin-miR-4014-3p mature miRNA
Sequence 35 - UUACAGAAAGCGUGUGUGUG - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39