miRBase entry: cin-mir-4014-2

Stem-loop cin-mir-4014-2


Accession
MI0015560
Description
Ciona intestinalis cin-mir-4014-2 precursor miRNA


Sequence

43784 reads, 4837.0 reads per million, 8 experiments
GCACCACGAGCUUUUUGGAAUGuuaacguucaUUACAGAAAGCGUGUGUGUG
.(((((((.((((((((..(((........)))..)))))))).)))).)))

Structure
G   -    A        GA   uua 
 CAC CACG GCUUUUUG  AUG   a
 ||| |||| ||||||||  |||    
 GUG GUGU CGAAAGAC  Uac   c
-   U    G        AU   uug 


Annotation confidence Medium
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Genome context
ref|NC_020177.1|: 3135494-3135545 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4014-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4014-2-5p

Accession MIMAT0016976
Description Ciona intestinalis cin-miR-4014-2-5p mature miRNA
Sequence 1 - GCACCACGAGCUUUUUGGAAUG - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4014-3p

Accession MIMAT0016519
Description Ciona intestinalis cin-miR-4014-3p mature miRNA
Sequence 33 - UUACAGAAAGCGUGUGUGUG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39